PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0119800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 83aa    MW: 9002.41 Da    PI: 10.9327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0119800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.93.1e-074873429
                    HHHHHHHHHHHHHHHHHHHHHCTSCC CS
             HLH  4 ahnerErrRRdriNsafeeLrellPk 29
                    ++ e+Er+RR++++  f+ Lr+l+P 
  Spipo0G0119800 48 KNLEAERKRRAKLKGQFFALRSLVPR 73
                    66799********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.49E-73775IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.6234482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.70E-54672No hitNo description
Gene3DG3DSA:4.10.280.108.1E-64776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-54773IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MPRQQRWGTG AADHDCGGYL VAGLLGGAAA ERTQHPGGVT PEIVYKSKNL EAERKRRAKL  60
KGQFFALRSL VPRITKACER KP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.17e-09bHLH family protein